program compablyity when converting from fat32 to ntfs

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From: alterslash (anonymous_at_discussions.microsoft.com)
Date: 04/27/04 

Date: Tue, 27 Apr 2004 16:35:23 -0700

I need to know wether when i convert my FAT32 hard drive
to NTFS, that all my programs won't be effected by the
file system change? and if they will still execute
properly?